Doctoral Degree Requirements

  • 72 credit hours beyond the bachelor's level
  • minimum of 37 course credits (including the core curriculum)
  • minimum of 24 hours of doctoral dissertation research
Requirements & Courses

Requirements

  • Maintain an average grade of B (GPA 3.0) for all 72 credit hours (Up to 24 graduate credit hours may be transferred with approval)
  • Complete courses with no more than one grade below a B- 
  • Complete at least one research rotation
  • Become integrated with a research group
  • Pass a qualifying exam
  • Successfully defend a thesis proposal
  • Present and successfully defend a dissertation
  • Complete the mentored teaching experience

Research Rotations

During their first year, students are required to register for and complete at least one research rotation (for 3 credit hours) with program faculty mentors. The research rotation(s) allow students to sample different research projects and laboratory working environments before selecting the group in which they will carry out the PhD dissertation research. 

A rotation will be chosen in consultation with faculty and must be mutually agreeable to both the student and the mentor. At the completion of each rotation, the student must submit to the mentor and director a written report approved by the mentor.

Courses

Required Core Courses (22 credit hours)

  • BME 5700, Mathematics of Imaging Science (3 credit hours)
  • ESE 5981, Seminar in Imaging Science and Engineering (1 credit hour)
  • BME 5933, Computational Methods for Imaging Science (3 credit hours)
  • ESE 5200, Probability & Stochastic Processes (3 credit hours)
  • ESE 5994, Practicum in Imaging Science (3 credit hours)
  • BME 8992, Research Rotation (3 credit hours)
  • ESE 5932, Computational Methods for Imaging Science (3 credit hours) or ESE 5130, Large Scale Optimization for Data Sciences or BME 5440, Biomedical Instrumentation
  • ESE 5890, Biological Imaging Technology (3 credit hours) or other physics elective
  • One machine learning elective

At least 12 credit hours in elective imaging coursework must be completed that span any of the following categories:

  • Computational Imaging & Theory
  • Imaging Sensors & Instrumentation
  • Image Formation & Imaging Physics
  • Translational Biomedical Imaging
  • Medical Physics 

Progression of Courses (typical)

First Semester
  • BME 5700, Mathematics of Imaging Science (3 credit hours)
  • ESE 5981, Seminar in Imaging Science & Engineering (1 credit hour)
  • BME 8992, Research rotation (3 credit hours)
  • Elective (3 credit hours)
Second Semester
  • ESE 5200, Probability & Stochastic Processes (3 credit hours)
  • ESE 5890, Biological Imaging Technology (3 credit hours)
  • Elective (3 credit hours) OR optional Second Research Rotation – BME 8992 (3 credit hours)
Third Semester
  • ESE 5933, Theoretical Imaging Science (3 credit hours)
  • Elective (3 credit hours)
Fourth Semester
  • ESE 5994, Practicum in Imaging Science (3 credit hours)
  • Elective or doctoral research (3 credit hours)
  • Elective or doctoral research (3 credit hours)


Electives Courses — Computational Imaging & Theory

  • CSE 5101, Introduction to Artificial Intelligence
  • CSE 5103, Theory of Artificial Intelligence & Machine Learning
  • CSE 5105, Bayesian Methods in Machine Learning
  • CSE 5107, Machine Learning
  • CSE 5109, Advanced Machine Learning
  • CSE 5403, Algorithms for Nonlinear Optimization
  • CSE 5406, Computational Geometry
  • CSE 5504, Geometric Computing for Biomedicine
  • CSE 5515, Computational Photography
  • CSE 5509, Computer Vision
  • CSE 5606, High Performance Computer Systems
  • ESE 5230, Information Theory
  • ESE 5880, Quantitative Image Processing
  • ESE 5240, Detection and Estimation Theory

Electives Courses — Image Formation & Imaging Physics

  • BME 5910, Biomedical Optics I
  • BME 5944, Ultrasound Imaging
  • ESE 5820 Fundamentals and Applications of Modern Optical Imaging
  • BME 5XXX, Advanced topics in Ultrasound Imaging (To be developed)
  • BME 5XXX, Magnetic Resonance Imaging (To be developed)
  • BME 5XXX, Imaging in Nuclear Medicine (To be developed)

Electives Courses — Medical Physics

  • BME 5070, Radiobiology
  • Medical Physics 5070, Radiation Oncology Physics
  • Medical Physics 5010, Radiological Physics and Dosimetry
  • Medical Physics 5080, Radiation Protection and Safety 

Approved Life Science Courses

  • BME 5300, Molecular Cell Biology for Engineers
  • BME 5380, Cell Signal Transduction
  • BME 5900, Cellular Neurophysiology
  • BIOL 4510, General Biochemistry
  • BIOL 5068 Fundamentals of Molecular Cell Biology
  • BIOL 5319 Molecular Foundations of Medicine
  • BIOL 5053 Immunobiology (4Cr)
  • BIOL 5146 Principles and Applications of Biological Imaging
  • BIOL/CHEM 5147 Contrast Agents for Biological Imaging
  • BIOL 5224 Molecular, Cell, and Organ Systems
  • BIOL 5285 Fundamentals of Mammalian Genetics
  • BIOL 5352 Developmental Biology
  • BIOL 5488 Genomics
  • BIOL 5571 Cellular Neurobiology (4 units)
  • BIOL 5651 Neural Systems
  • BIOL 4040 Laboratory of Neurophysiology
  • BIOL 5480 Nucleic Acids and Protein Biosynthesis
  • BIOL 5663 Neurobiology of Disease

Approved Mathematics Courses — Any graduate-level course within the Department of Mathematics is approved.

Qualifying Exam

Students take the qualifying exam in July of their second year. Each student is assigned a qualifying exam committee of three Imaging Science program faculty members. The committee is appointed by the co-directors; students will be given the opportunity to nominate committee members, but the committee members are selected by the co-directors. One qualifying exam committee member is designated as chair of the committee. The research advisor will not be a member of the qualifying exam committee. The qualifying exam consists of a written research report, due to the committee two weeks prior to the exam and a research presentation, 20 minutes in length, followed by 40 minutes of Q&A.

Thesis

Finding a Thesis Research Mentor

Because the PhD is a research degree, the student is expected to become integrated within a research group. By the end of the first year semester of study, the student should have found a thesis adviser who will oversee his/her PhD research and assume financial responsibility for stipend, tuition, health insurance, and student fees. The thesis adviser must be a faculty member in Imaging Science PhD Program Committee with the title of Professor, Associate Professor, or Assistant Professor. Failure to find a research adviser by December 31 will result in the student being placed on probation that can last up until May 31. During that time, the student must continue to seek a research adviser. Failure to find a research adviser by May 31 will lead to dismissal from the PhD program and termination of funding.

Research Presentation/Thesis Proposal 

Before the end of the student's third year, the student will give an oral presentation of his/her proposed PhD project, with the necessary background to support it, to the Thesis Committee. The dissertation proposal should be completed by the end of the third year. The proposal and presentation will include a thorough survey of the field, a discussion of those areas in need of further research and a tentative but clear definition of the problem on which the student intends to focus the dissertation. The student must present a written proposal to the committee at least two weeks in advance of the exam.  The format and length of the proposal should be approved by the mentor; at a minimum the proposed work should have clearly stated goals and timelines.  Many students choose to use a format based on NIH proposals (e.g. R21). 

The format of the exam is as follows. The student should present the proposed research for approximately 30 minutes. Following the presentation, the committee discusses the proposal with the student to evaluate the scope, merit and progress of the proposed research. With the student removed from the meeting, the dissertation committee votes on the outcome of the exam and completes the exam form, following which the committee meets with the student and the advisor.

Dissertation 

The scope of the dissertation should be equivalent to three good journal papers. In the best case, papers describing the contributions of the dissertation are accepted in peer-reviewed journals. In many cases, such papers are a combination of accepted papers and those submitted prior to the defense.  Different subfields of imaging science have varying standards that should be recognized by the committee as part of the evaluation process. In some subfields, combining multiple contributions into a larger, more impactful paper is a preferred practice, while in other subfields a larger number of smaller papers is a preferred practice. The evaluation of the quality and impact of the dissertation and resulting papers is ultimately assigned to the dissertation committee.

Upon completion of the dissertation, the doctoral candidate must work with the graduate program advisor to submit the PhD Dissertation Defense Committee approval and schedule the defense at least one month in advance. The candidate presents the dissertation in a public forum and successfully defends the dissertation before the Dissertation Defense Committee.  The dissertation must be approved by the dissertation committee as part of the final examination.

Teaching Requirements

After successfully completing the qualifying process, but before the dissertation defense, doctoral students must complete the mentored teaching experience (MTE). The MTE is fulfilled by completing McKelvey’s MTE training and serving as Assistant in Instruction for one semester in an approved course, documented by registration in EGS 8010-28: Mentored Teaching Experience.